species:   Drmel
pid:       MI0005822
parent:    dme-mir-966
paralog:   
locus:     NT_033779.5:6045627-6045713
matures:   ['UGUGGGUUGUGGGCUGUGUGG', 'GCCAGUUGAUAACCCCCAGC']
srr:       SRR11906542
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906542.cram NT_033779.5:6045627-6045713

0 out of bounds
15 alignments
15 proper strand
15 stranded perfect matches

             ***********************              **********************               
AACCUGAUCCGCUGCUGUGGGUUGUGGGCUGUGUGGCUGUGGUAUAGGUGCCGCCAGUUGAUAACCCCCAGCGUGGGCACGGACCCA
..((((.(((((.((((.(((((((.(((((.(((((............)))))))))).))))))).))))))))))).)).....
---------------UGUGGGUUGUGGGCUGUGUGG--------------------------------------------------- l=21 a=6 c
----------------------------------------------------GCCAGUUGAUAACCCCCAGC--------------- l=20 a=0 c*
---------------UGUGGGUUGUGGGCUGUGUGG--------------------------------------------------- l=21 a=6 ma
----------------------------------------------------GCCAGUUGAUAACCCCCAGC--------------- l=20 a=0 ma*

--------------------------------------------------CCGCCAGUUGAUAACCCCCAGC--------------- l=22 a=2 
-------------------------------------------------GCCGCCAGUUGAUAACCCCC------------------ l=20 a=1 
-------------------------------------------------GCCGCCAGUUGAUAACCCCCA----------------- l=21 a=1 
---------------UGUGGGUUGUGGGCUGUG------------------------------------------------------ l=18 a=1 
---------------UGUGGGUUGUGGGCUGUGUG---------------------------------------------------- l=20 a=1 
---------------UGUGGGUUGUGGGCUGUGUGG--------------------------------------------------- l=21 a=6 (c,ma)
---------------UGUGGGUUGUGGGCUGUGUGGC-------------------------------------------------- l=22 a=1 
---------------UGUGGGUUGUGGGCUGUGUGGCU------------------------------------------------- l=23 a=2 

mb-01111
ax-1011011
ku-01
ss-111111111110
fn-011
